Detailed information of SNP:
|
SNP ID:
sf0600351193(Gbrowse)
Chromosome: chr06 Position: 351193 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.74% | 38.26% |
| All Indica | 795 | 40.63% | 59.37% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 373 | 35.12% | 64.88% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 210 | 34.29% | 65.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600351193 | C->T | INTERGENIC | None |