Detailed information of SNP:
|
SNP ID:
sf0600458724(Gbrowse)
Chromosome: chr06 Position: 458724 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 67.61% | 32.39% |
| All Indica | 794 | 44.08% | 55.92% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 32.27% | 67.73% |
| Indica II | 209 | 69.38% | 30.62% |
| Indica Intermediate | 210 | 40.00% | 60.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600458724 | G->T | INTERGENIC | None |