Detailed information of SNP:
|
SNP ID:
sf0600543520(Gbrowse)
Chromosome: chr06 Position: 543520 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 72.35% | 27.65% |
| All Indica | 788 | 55.58% | 44.42% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 370 | 52.43% | 47.57% |
| Indica II | 212 | 61.32% | 38.68% |
| Indica Intermediate | 206 | 55.34% | 44.66% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600543520 | G->C | LOC_Os06g01966(LOC_Os06g01966.1) | INTRON |