Detailed information of SNP:
|
SNP ID:
sf0600575808(Gbrowse)
Chromosome: chr06 Position: 575808 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 58.70% | 41.30% |
| All Indica | 795 | 90.69% | 9.31% |
| All Japonica | 496 | 1.61% | 98.39% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 212 | 83.96% | 16.04% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600575808 | C->T | INTERGENIC | None |