Detailed information of SNP:
|
SNP ID:
sf0600618986(Gbrowse)
Chromosome: chr06 Position: 618986 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 91.42% | 8.58% |
| All Indica | 790 | 86.20% | 13.80% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 374 | 90.91% | 9.09% |
| Indica II | 212 | 92.92% | 7.08% |
| Indica Intermediate | 204 | 70.59% | 29.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600618986 | A->C | INTERGENIC | None |