Detailed information of SNP:
|
SNP ID:
sf0600663679(Gbrowse)
Chromosome: chr06 Position: 663679 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.45% | 45.55% |
| All Indica | 797 | 27.10% | 72.90% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 9.87% | 90.13% |
| Indica II | 213 | 48.36% | 51.64% |
| Indica Intermediate | 209 | 36.36% | 63.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600663679 | C->A | LOC_Os06g02180(LOC_Os06g02180.1) | INTRON |