Detailed information of SNP:
|
SNP ID:
sf0600685097(Gbrowse)
Chromosome: chr06 Position: 685097 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.30% | 30.70% |
| All Indica | 797 | 50.19% | 49.81% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 51.47% | 48.53% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 210 | 50.95% | 49.05% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600685097 | G->T | INTERGENIC | None |