Detailed information of SNP:
|
SNP ID:
sf0600799693(Gbrowse)
Chromosome: chr06 Position: 799693 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 52.12% | 47.88% |
| All Indica | 799 | 84.73% | 15.27% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 91.20% | 8.80% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600799693 | T->G | LOC_Os06g02370(LOC_Os06g02370.1) | UTR_5_PRIME |
| sf0600799693 | T->G | LOC_Os06g02370(LOC_Os06g02370.3) | UTR_5_PRIME |