Detailed information of SNP:
|
SNP ID:
sf0600804044(Gbrowse)
Chromosome: chr06 Position: 804044 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.46% | 46.54% |
| All Indica | 799 | 83.73% | 16.27% |
| All Japonica | 497 | 4.63% | 95.37% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600804044 | G->A | INTERGENIC | None |