Detailed information of SNP:
|
SNP ID:
sf0600825407(Gbrowse)
Chromosome: chr06 Position: 825407 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1365 | 89.30% | 10.70% |
| All Indica | 751 | 80.83% | 19.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 98.39% | 1.61% |
| Indica I | 340 | 62.06% | 37.94% |
| Indica II | 209 | 97.61% | 2.39% |
| Indica Intermediate | 202 | 95.05% | 4.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600825407 | T->C | LOC_Os06g02400(LOC_Os06g02400.1) | Non-Synonymous SNP |