Detailed information of SNP:
|
SNP ID:
sf0600834520(Gbrowse)
Chromosome: chr06 Position: 834520 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 50.36% | 49.64% |
| All Indica | 790 | 18.86% | 81.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 0.27% | 99.73% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 202 | 16.34% | 83.66% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600834520 | C->T | INTERGENIC | None |