Detailed information of SNP:
|
SNP ID:
sf0600883900(Gbrowse)
Chromosome: chr06 Position: 883900 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 86.92% | 13.08% |
| All Indica | 787 | 92.63% | 7.37% |
| All Japonica | 497 | 76.66% | 23.34% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 203 | 81.28% | 18.72% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 71.94% | 28.06% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600883900 | A->G | INTERGENIC | None |