Detailed information of SNP:
|
SNP ID:
sf0600911721(Gbrowse)
Chromosome: chr06 Position: 911721 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 70.06% | 29.94% |
| All Indica | 798 | 57.77% | 42.23% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 375 | 67.20% | 32.80% |
| Indica II | 212 | 43.87% | 56.13% |
| Indica Intermediate | 211 | 54.98% | 45.02% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600911721 | G->A | INTERGENIC | None |