Detailed information of SNP:
|
SNP ID:
sf0600925010(Gbrowse)
Chromosome: chr06 Position: 925010 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 72.22% | 27.78% |
| All Indica | 798 | 56.89% | 43.11% |
| All Japonica | 490 | 92.04% | 7.96% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 36.00% | 64.00% |
| Indica II | 213 | 84.04% | 15.96% |
| Indica Intermediate | 210 | 66.67% | 33.33% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 88 | 56.82% | 43.18% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600925010 | C->T | LOC_Os06g02610(LOC_Os06g02610.1) | INTRON |
| sf0600925010 | C->T | LOC_Os06g02610(LOC_Os06g02610.1) | SNPs that disrupt splice sites |