Detailed information of SNP:



SNP ID: sf0600948543(Gbrowse)

Chromosome: chr06

Position: 948543
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1419 97.89% 2.11%
All Indica799 98.50% 1.50%
All Japonica497 96.98% 3.02%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 94.37% 5.63%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 85.11% 14.89%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0600948543 G->A LOC_Os06g02660(LOC_Os06g02660.1) Non-Synonymous SNP