Detailed information of SNP:
|
SNP ID:
sf0600999810(Gbrowse)
Chromosome: chr06 Position: 999810 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 61.76% | 38.24% |
| All Indica | 788 | 89.72% | 10.28% |
| All Japonica | 494 | 12.75% | 87.25% |
| Aus | 63 | 96.83% | 3.17% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 210 | 71.43% | 28.57% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 333 | 3.00% | 97.00% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0600999810 | T->C | LOC_Os06g02750(LOC_Os06g02750.1) | INTRON |