Detailed information of SNP:
SNP ID:
sf0601000134(Gbrowse)
Chromosome: chr06 Position: 1000134 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1415 | 96.68% | 3.32% |
All Indica | 798 | 94.49% | 5.51% |
All Japonica | 494 | 99.39% | 0.61% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 375 | 96.27% | 3.73% |
Indica II | 213 | 91.55% | 8.45% |
Indica Intermediate | 210 | 94.29% | 5.71% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 91 | 96.70% | 3.30% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0601000134 | T->C | LOC_Os06g02750(LOC_Os06g02750.1) | INTRON |