Detailed information of SNP:
|
SNP ID:
sf0601000134(Gbrowse)
Chromosome: chr06 Position: 1000134 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 96.68% | 3.32% |
| All Indica | 798 | 94.49% | 5.51% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601000134 | T->C | LOC_Os06g02750(LOC_Os06g02750.1) | INTRON |