Detailed information of SNP:



SNP ID: sf0601000134(Gbrowse)

Chromosome: chr06

Position: 1000134
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1415 96.68% 3.32%
All Indica798 94.49% 5.51%
All Japonica494 99.39% 0.61%
Aus67 100.00% 0.00%
Indica I375 96.27% 3.73%
Indica II213 91.55% 8.45%
Indica Intermediate210 94.29% 5.71%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica91 96.70% 3.30%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0601000134 T->C LOC_Os06g02750(LOC_Os06g02750.1) INTRON