Detailed information of SNP:
|
SNP ID:
sf0601043443(Gbrowse)
Chromosome: chr06 Position: 1043443 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 59.67% | 40.33% |
| All Indica | 791 | 83.94% | 16.06% |
| All Japonica | 497 | 14.49% | 85.51% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 209 | 70.81% | 29.19% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 335 | 10.15% | 89.85% |
| Tropical Japonica | 94 | 36.17% | 63.83% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601043443 | T->C | INTERGENIC | None |