Detailed information of SNP:
|
SNP ID:
sf0601057375(Gbrowse)
Chromosome: chr06 Position: 1057375 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 92.60% | 7.40% |
| All Indica | 799 | 91.99% | 8.01% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601057375 | G->A | LOC_Os06g02880(LOC_Os06g02880.1) | Non-Synonymous SNP |