Detailed information of SNP:
|
SNP ID:
sf0601058248(Gbrowse)
Chromosome: chr06 Position: 1058248 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1391 | 84.83% | 15.17% |
| All Indica | 776 | 81.57% | 18.43% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 369 | 85.91% | 14.09% |
| Indica II | 206 | 79.61% | 20.39% |
| Indica Intermediate | 201 | 75.62% | 24.38% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601058248 | A->G | LOC_Os06g02880(LOC_Os06g02880.1) | Non-Synonymous SNP |