Detailed information of SNP:
|
SNP ID:
sf0601058761(Gbrowse)
Chromosome: chr06 Position: 1058761 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 63.05% | 36.95% |
| All Indica | 799 | 91.86% | 8.14% |
| All Japonica | 489 | 10.43% | 89.57% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 74.65% | 25.35% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 329 | 0.61% | 99.39% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601058761 | T->C | LOC_Os06g02880(LOC_Os06g02880.1) | Non-Synonymous SNP |