Detailed information of SNP:
|
SNP ID:
sf0601073898(Gbrowse)
Chromosome: chr06 Position: 1073898 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 93.99% | 6.01% |
| All Indica | 794 | 94.08% | 5.92% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 373 | 94.64% | 5.36% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601073898 | G->A | LOC_Os06g02920(LOC_Os06g02920.1) | INTRON |