Detailed information of SNP:
|
SNP ID:
sf0601077673(Gbrowse)
Chromosome: chr06 Position: 1077673 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 89.71% | 10.29% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 92.53% | 7.47% |
| Indica II | 213 | 92.49% | 7.51% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 89.55% | 10.45% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601077673 | T->C | LOC_Os06g02930(LOC_Os06g02930.1) | Non-Synonymous SNP |