Detailed information of SNP:
|
SNP ID:
sf0601100827(Gbrowse)
Chromosome: chr06 Position: 1100827 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1374 | 66.23% | 33.77% |
| All Indica | 757 | 45.18% | 54.82% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 353 | 26.35% | 73.65% |
| Indica II | 207 | 66.67% | 33.33% |
| Indica Intermediate | 197 | 56.35% | 43.65% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601100827 | T->C | LOC_Os06g03000(LOC_Os06g03000.1) | Non-Synonymous SNP |