Detailed information of SNP:
|
SNP ID:
sf0601148833(Gbrowse)
Chromosome: chr06 Position: 1148833 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 77.33% | 22.67% |
| All Indica | 796 | 69.60% | 30.40% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 79.41% | 20.59% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 209 | 70.33% | 29.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601148833 | G->A | INTERGENIC | None |