Detailed information of SNP:
|
SNP ID:
sf0601175962(Gbrowse)
Chromosome: chr06 Position: 1175962 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 94.43% | 5.57% |
| All Indica | 749 | 92.26% | 7.74% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 348 | 89.94% | 10.06% |
| Indica II | 201 | 92.04% | 7.96% |
| Indica Intermediate | 200 | 96.50% | 3.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 86.17% | 13.83% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601175962 | G->A | INTERGENIC | None |