Detailed information of SNP:
|
SNP ID:
sf0601212319(Gbrowse)
Chromosome: chr06 Position: 1212319 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 72.29% | 27.71% |
| All Indica | 778 | 58.10% | 41.90% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 63 | 55.56% | 44.44% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 196 | 63.27% | 36.73% |
| Indica Intermediate | 207 | 43.00% | 57.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601212319 | T->C | INTERGENIC | None |