Detailed information of SNP:
|
SNP ID:
sf0601212670(Gbrowse)
Chromosome: chr06 Position: 1212670 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.57% | 11.43% |
| All Indica | 798 | 85.71% | 14.29% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 212 | 66.98% | 33.02% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601212670 | C->T | INTERGENIC | None |