Detailed information of SNP:
|
SNP ID:
sf0601213643(Gbrowse)
Chromosome: chr06 Position: 1213643 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1412 | 76.63% | 23.37% |
| All Indica | 796 | 63.94% | 36.06% |
| All Japonica | 493 | 98.58% | 1.42% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 46.26% | 53.74% |
| Indica II | 213 | 85.45% | 14.55% |
| Indica Intermediate | 209 | 73.68% | 26.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 92.22% | 7.78% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601213643 | T->G | INTERGENIC | None |