Detailed information of SNP:
|
SNP ID:
sf0601213663(Gbrowse)
Chromosome: chr06 Position: 1213663 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1386 | 55.77% | 44.23% |
| All Indica | 777 | 74.39% | 25.61% |
| All Japonica | 486 | 20.16% | 79.84% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 371 | 88.41% | 11.59% |
| Indica II | 200 | 62.50% | 37.50% |
| Indica Intermediate | 206 | 60.68% | 39.32% |
| Temperate Japonica | 332 | 18.07% | 81.93% |
| Tropical Japonica | 86 | 37.21% | 62.79% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601213663 | T->C | INTERGENIC | None |