Detailed information of SNP:
|
SNP ID:
sf0601213800(Gbrowse)
Chromosome: chr06 Position: 1213800 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 94.48% | 5.52% |
| All Indica | 786 | 92.49% | 7.51% |
| All Japonica | 486 | 97.74% | 2.26% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 369 | 94.04% | 5.96% |
| Indica II | 208 | 87.50% | 12.50% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 84 | 88.10% | 11.90% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601213800 | C->T | INTERGENIC | None |