Detailed information of SNP:
|
SNP ID:
sf0601226920(Gbrowse)
Chromosome: chr06 Position: 1226920 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.30% | 47.70% |
| All Indica | 793 | 25.98% | 74.02% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 370 | 14.05% | 85.95% |
| Indica II | 213 | 49.77% | 50.23% |
| Indica Intermediate | 210 | 22.86% | 77.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601226920 | G->A | INTERGENIC | None |