Detailed information of SNP:
|
SNP ID:
sf0601261656(Gbrowse)
Chromosome: chr06 Position: 1261656 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 93.09% | 6.91% |
| All Indica | 786 | 90.08% | 9.92% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 365 | 92.05% | 7.95% |
| Indica II | 211 | 90.52% | 9.48% |
| Indica Intermediate | 210 | 86.19% | 13.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601261656 | G->A | LOC_Os06g03310(LOC_Os06g03310.1) | Synonymous |