Detailed information of SNP:
|
SNP ID:
sf0601265369(Gbrowse)
Chromosome: chr06 Position: 1265369 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 97.01% | 2.99% |
| All Indica | 760 | 96.05% | 3.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 83.61% | 16.39% |
| Indica I | 350 | 96.29% | 3.71% |
| Indica II | 208 | 98.08% | 1.92% |
| Indica Intermediate | 202 | 93.56% | 6.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601265369 | G->T | LOC_Os06g03320(LOC_Os06g03320.1) | Synonymous |