Detailed information of SNP:
|
SNP ID:
sf0601271372(Gbrowse)
Chromosome: chr06 Position: 1271372 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 71.77% | 28.23% |
| All Indica | 799 | 58.82% | 41.18% |
| All Japonica | 483 | 96.27% | 3.73% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 65.07% | 34.93% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 211 | 45.97% | 54.03% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 81 | 80.25% | 19.75% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601271372 | C->T | INTERGENIC | None |