Detailed information of SNP:
|
SNP ID:
sf0601321491(Gbrowse)
Chromosome: chr06 Position: 1321491 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1259 | 93.33% | 6.67% |
| All Indica | 660 | 89.85% | 10.15% |
| All Japonica | 491 | 99.59% | 0.41% |
| Aus | 60 | 85.00% | 15.00% |
| Indica I | 328 | 91.77% | 8.23% |
| Indica II | 181 | 92.27% | 7.73% |
| Indica Intermediate | 151 | 82.78% | 17.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 80.00% | 20.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601321491 | A->G | LOC_Os06g03460(LOC_Os06g03460.1) | Synonymous |