Detailed information of SNP:
|
SNP ID:
sf0601346423(Gbrowse)
Chromosome: chr06 Position: 1346423 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 57.08% | 42.92% |
| All Indica | 793 | 73.64% | 26.36% |
| All Japonica | 496 | 23.99% | 76.01% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 75.67% | 24.33% |
| Indica II | 210 | 71.43% | 28.57% |
| Indica Intermediate | 209 | 72.25% | 27.75% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 93 | 36.56% | 63.44% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601346423 | C->T | LOC_Os06g03500(LOC_Os06g03500.1) | Non-Synonymous SNP |