Detailed information of SNP:
|
SNP ID:
sf0601372353(Gbrowse)
Chromosome: chr06 Position: 1372353 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 72.80% | 27.20% |
| All Indica | 799 | 78.35% | 21.65% |
| All Japonica | 497 | 68.61% | 31.39% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 68.25% | 31.75% |
| Temperate Japonica | 335 | 69.55% | 30.45% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601372353 | A->G | LOC_Os06g03560(LOC_Os06g03560.1) | INTRON |