Detailed information of SNP:
|
SNP ID:
sf0601383229(Gbrowse)
Chromosome: chr06 Position: 1383229 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.45% | 17.55% |
| All Indica | 799 | 83.10% | 16.90% |
| All Japonica | 497 | 88.33% | 11.67% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 61.50% | 38.50% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601383229 | C->T | LOC_Os06g03580(LOC_Os06g03580.2) | INTRON |
| sf0601383229 | C->T | LOC_Os06g03580(LOC_Os06g03580.3) | INTRON |
| sf0601383229 | C->T | LOC_Os06g03580(LOC_Os06g03580.4) | UTR_5_PRIME |
| sf0601383229 | C->T | LOC_Os06g03580(LOC_Os06g03580.1) | INTRON |