Detailed information of SNP:
|
SNP ID:
sf0601413571(Gbrowse)
Chromosome: chr06 Position: 1413571 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 87.59% | 12.41% |
| All Indica | 799 | 84.11% | 15.89% |
| All Japonica | 493 | 96.35% | 3.65% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 63.38% | 36.62% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 90 | 82.22% | 17.78% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 40 | 85.00% | 15.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601413571 | C->T | LOC_Os06g03640(LOC_Os06g03640.1) | Synonymous |