Detailed information of SNP:
|
SNP ID:
sf0601433009(Gbrowse)
Chromosome: chr06 Position: 1433009 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 68.25% | 31.75% |
| All Indica | 795 | 89.31% | 10.69% |
| All Japonica | 497 | 33.40% | 66.60% |
| Aus | 66 | 80.30% | 19.70% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 67.92% | 32.08% |
| Indica Intermediate | 208 | 93.75% | 6.25% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601433009 | T->C | INTERGENIC | None |