Detailed information of SNP:
|
SNP ID:
sf0601444284(Gbrowse)
Chromosome: chr06 Position: 1444284 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1385 | 59.35% | 40.65% |
| All Indica | 771 | 34.63% | 65.37% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 14.93% | 85.07% |
| Indica II | 189 | 61.90% | 38.10% |
| Indica Intermediate | 207 | 45.41% | 54.59% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601444284 | A->G | INTERGENIC | None |