Detailed information of SNP:
|
SNP ID:
sf0601460906(Gbrowse)
Chromosome: chr06 Position: 1460906 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 55.88% | 44.12% |
| All Indica | 799 | 28.41% | 71.59% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 9.87% | 90.13% |
| Indica II | 213 | 50.70% | 49.30% |
| Indica Intermediate | 211 | 38.86% | 61.14% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601460906 | C->T | LOC_Os06g03700(LOC_Os06g03700.1) | INTRON |