Detailed information of SNP:
|
SNP ID:
sf0601464471(Gbrowse)
Chromosome: chr06 Position: 1464471 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 59.13% | 40.87% |
| All Indica | 799 | 76.35% | 23.65% |
| All Japonica | 497 | 29.18% | 70.82% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 49.30% | 50.70% |
| Indica Intermediate | 211 | 75.36% | 24.64% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601464471 | C->A | INTERGENIC | None |