Detailed information of SNP:
|
SNP ID:
sf0601469320(Gbrowse)
Chromosome: chr06 Position: 1469320 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 70.96% | 29.04% |
| All Indica | 797 | 92.97% | 7.03% |
| All Japonica | 493 | 30.83% | 69.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 211 | 76.78% | 23.22% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 31.94% | 68.06% |
| Tropical Japonica | 90 | 27.78% | 72.22% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601469320 | T->C | INTERGENIC | None |