Detailed information of SNP:
|
SNP ID:
sf0601477452(Gbrowse)
Chromosome: chr06 Position: 1477452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 58.53% | 41.47% |
| All Indica | 798 | 34.21% | 65.79% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 9.89% | 90.11% |
| Indica II | 213 | 62.91% | 37.09% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601477452 | C->T | INTERGENIC | None |