Detailed information of SNP:
|
SNP ID:
sf0601479020(Gbrowse)
Chromosome: chr06 Position: 1479020 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 72.14% | 27.86% |
| All Indica | 799 | 92.37% | 7.63% |
| All Japonica | 496 | 35.28% | 64.72% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 31.94% | 68.06% |
| Tropical Japonica | 94 | 51.06% | 48.94% |
| Japonica Intermediate | 67 | 29.85% | 70.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601479020 | T->C | LOC_Os06g03750(LOC_Os06g03750.1) | INTRON |