Detailed information of SNP:
|
SNP ID:
sf0601489088(Gbrowse)
Chromosome: chr06 Position: 1489088 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 66.83% | 33.17% |
| All Indica | 797 | 46.55% | 53.45% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 32.27% | 67.73% |
| Indica II | 213 | 63.85% | 36.15% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601489088 | G->A | LOC_Os06g03760(LOC_Os06g03760.3) | Synonymous |
| sf0601489088 | G->A | LOC_Os06g03760(LOC_Os06g03760.2) | Synonymous |
| sf0601489088 | G->A | LOC_Os06g03760(LOC_Os06g03760.1) | Synonymous |