Detailed information of SNP:
|
SNP ID:
sf0601497594(Gbrowse)
Chromosome: chr06 Position: 1497594 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 63.42% | 36.58% |
| All Indica | 799 | 42.93% | 57.07% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 32.84% | 67.16% |
| Indica I | 375 | 32.53% | 67.47% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 211 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601497594 | G->A | LOC_Os06g03770(LOC_Os06g03770.1) | INTRON |