Detailed information of SNP:
|
SNP ID:
sf0601513137(Gbrowse)
Chromosome: chr06 Position: 1513137 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 87.01% | 12.99% |
| All Indica | 797 | 77.54% | 22.46% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 69.60% | 30.40% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 209 | 72.25% | 27.75% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0601513137 | A->T | LOC_Os06g03790(LOC_Os06g03790.1) | INTRON |